A signal accumulation type of ion-sensitive field-effect transistor (SA-ISFET) acts as a biosensor capable of detecting changes in hydrogen ions due to enzymatic reactions. In this study, we describe an alkaline phosphatase (AP) activity detection method that uses SA-ISFET and a reagent containing pyrophosphate which acts as both substrate and buffer. The method enabled simple and cost-effective AP assays, when potential signals accumulated 10-fold. Calf intestinal AP did not require the cofactors Zn2+ and Mg2+ for the assay, whereas AP from Shewanella sp. T3-3 did. Different metal ion-dependence on the assays was explained by the structural comparison of both AP. In addition, assay application to a labeled enzyme detection system based on an immunoassay was discussed.